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Once converted, the reads can then be aligned using a variety of aligners compatible with FASTQ input (Figure 19) . You can also perform other tasks such as Pre-alignment QAQC or run an existing pipeline.   Another option is to include the Convert to FASTQ task in your pipeline and you can invoke the pipeline directly from an Unaligned bam data node.Image Removed
Figure 24:

Deleting the Data in Partek Flow

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You do not have to delete files to delete a Project. Should you retain the files, they will remain in the Partek Flow server and can be deleted outside Partek Flow. 

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