Partek Flow Documentation

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Since there is only one model for all features, so there is no pie charts design models and response distribution information. The Gene list table format is the same as the GSA report.

References

  1. Benjamini, Y., Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing, JRSS, B, 57, 289-300.
  2. Storey JD. (2003) The positive false discovery rate: A Bayesian interpretation and the q-value. Annals of Statistics, 31: 2013-2035.
  3. Auer, 2011, A two-stage Poisson model for testing RNA-Seq
  4. Burnham, Anderson, 2010, Model selection and multimodel inference
  5. Law C, Voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biology, 2014 15:R29.
  6. http://cole-trapnell-lab.github.io/cufflinks/cuffdiff/index.html#cuffdiff-output-files
  7. Anders S, Huber W: Differential expression analysis for sequence count data. Genome Biology, 2010

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