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• Region name: the genomic feature identifier (as specified in the annotation file)

• Chromosome: the chromosome of the genomic feature (or region)

• Start: the start position of the genomic feature (1-based)

• Stop: the stop position of the genomic feature (2-based, which means the stop position is exclusive)

• Strand: the strand of the genomic feature

• Total exon length: the length of the genomic feature

• Reads: the total number of reads aligning to the genomic feature

• % GC: the percentage of GC contents of those reads aligning to the genomic feature

• % N: the percentage of ambiguous bases (N) of those reads aligning to the genomic feature

• (n)x: the proportion of the genomic feature which is covered by at least n number of alignments. [Note: n is the coverage level that you specified when submitting Coverage report task, defaults are 1×, 20×, 100×]

• Average coverage: the average sequencing depth across all bases in the genomic feature

• Average quality: the average quality score across covered bases in the genomic feature

•  : the invokes the Coverage graph across the genomic feature, showing the current sample only (Figure 23) (or mouse over to get a preview of the plot)

• Image Modified : the invokes the Chromosome view and browses to the genomic location

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