Flow Documentation

Partek Flow Documentation

Page tree

Versions Compared

Old Version 50

changes.mady.by.user Melissa del Rosario

Saved on

compared with

New Version 51

changes.mady.by.user admin

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Numbered figure captions
SubtitleTextANOVA comparisons setup dialog: The example in the figure shows a single factor (Cell type) with two levels (A and B). A contrast A vs. B has been set
AnchorNameComparisons setup dialog

Start by choosing a factor or interaction from the Factor drop-down list. The subgroups of the factor or interaction will be displayed in the left panel; click to select a subgroup name and move it to one of the panels on the right. The fold change calculation on the comparison will use the group in the top panel as numerator, and the group in the bottom panel as the denominator. Click on Add comparison button to add one comparison to the comparisons table. Note that multiple comparisons can be added to the specified model.

ANOVA advanced options

Click on the Configure to customize Advanced options (Figure 17)

...

Numbered figure captions
SubtitleTextCuffdiff setup dialog. “Select attributes(s) to groups samples” lists the categorical attributes which have at least two levels (e.g. “Cell type” and “Time”)
AnchorNameCuffdiff setup dialog.

When an attribute is selected, pairwise comparisons of all the levels will be performed independently.

Click on Configure button in the Advanced options to configure normalization method and library types (Figure 19).


Numbered figure captions
SubtitleTextAdvanced option of cuffdiff
AnchorNameAdvanced options of cuffdiff

...