Partek Flow Documentation

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SubtitleTextAdditional settings may be requested for certain tasks when loading a pipeline. In this example, the STAR alignment task is requesting an index to align to
AnchorNameAdditional settings selection

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The additional settings requested for certain tasks allows for flexibility in how the pipelines are used. For example, a pipeline that was initially created from a project on human data can be reused on data from another species by specifying a different Assembly (Figure 2). Other examples include performing quantification using different annotation models and customizing statistical models for different study designs.

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