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Clicking the big grey button of Create Cell Ranger ARC 2.0.0 reference would pop up a new window where lists the requirements that users need to fill in (Figure 3). To create the same reference genomes (2020-A) that are provided in Cell Ranger by default, the transcriptome annotations are respectively GENCODE v32  for human and vM23 for mouse, which are equivalent to Ensembl 98[3]. If users don't have any options in the dropdown list, they can click Add annotation model (GTF file) for Index, or New assembly... (FASTA file)for Assembly and upload the files. 

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