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Low-expression feature and Multiple test correction sections are the same as the matching GSA advanced option, see above GSA advanced options.

Report option

• • User only reliable estimation results: There are situations when a model estimation procedure does not fail outright, but still encounters some difficulties. In this case,  it can even generate p-value and fold change on the comparisons, but they are not reliable, i.e. they can be misleading. Therefore, the default of Use only reliable estimation results is set Yes.

  • Display p-value for effects: If set to No, only the p-value of comparison will be displayed on the report, the p-value of the factors and interaction terms are not shown in the report table. When you choose Yes in addition to the comparison’s p-value, type III p-values are displayed for all the non-random terms in the model.

  • Report partial correlations: If the model has a numeric factor(s), when choosing Yes, partial correlation coefficient(s) of the numeric factor(s) will be displayed in the  result table. When choosing No,  partial correlation coefficients are not shown.

  • Data has been log transformed with base: showing the current scale of the input data on this task.

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