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| SubtitleText | Specifying attribute levels for sub-group comparisons (contrast): Select A for Cell type on the top, B for Cell type on the bottom, and click Add comparison to compare A vs B |
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| AnchorName | Subgroup attribute selection |
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To compare Time point 5 vs. 0, select 5 for Time on the top, 0 for Time on the bottom, and click Add comparison (Figure 3).
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| SubtitleText | Specifying attribute levels for sub-group comparisons (contrast): Select 5 for Time on the top, 0 for Time on the bottom, click Add comparison to compare 5 vs 0 |
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| AnchorName | Subgroup Attribute comparison |
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To compare cell types at a certain time point, e.g. time point 5, select A and 5 on the top, and B and 5 on the bottom. Thereafter click Add comparison (Figure 4).
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| SubtitleText | Specifying attribute levels for subgroup comparisons (contrast): Select A and 5 on the top, B and 5 on the bottom, click Add comparison to compare A*5 vs B*5 |
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| AnchorName | Subgroup attribute comparrison contrast |
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Multiple comparisons can be computed in one GSA run; Figure 5 shows the above three comparisons are added in the computation.
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| SubtitleText | Configuring advanced GSA options |
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| AnchorName | GSA advanced options |
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Low-expression feature
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| SubtitleText | Configuring advanced options when running ANOVA |
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| AnchorName | Advanced ANOVA options |
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Low-expression feature and Multiple test correction sections are the same as the matching GSA advanced option, see above GSA advanced options
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