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Partek ® Flow ® accepts custom-made Affymetrix .CEL and Illumina .idat or AVGSignal data generated from Genome Studio files as input. These require an accompanying probe annotation file.
This document describes how to create and import your own custom-microarray annotation files for use in Partek Flow.
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Importing Annotation Files into Library File Management
The annotation files can then be uploaded into Partek Flow by going to Settings>Library File Management, selecting the Microarray library files tab and clicking the Add probe sequence button (Figure 1).
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Converting Custom Microarray Files into Aligned Reads
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When prompted to select the probe sequence file, click the Chip name drop-down menu and select the chip name for your custom chip.
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Overview
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