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- Select the Feature list data node
- Select the Visualizations section of the task menu
- Select Hierarchical clustering from the Visualizations section of the task menu (Figure 1)
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The Hierarchical clustering menu will open (Figure 2).
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- Select Finish to run with default settings
A Hierarchical clustering task node will be added to the pipeline (Figure 3).
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- Double-click the Hierarchical clustering task node to launch the heat map
The Dendrogram view will open showing a heat map with the hierarchical clustering results (Figure 4).
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Samples are shown on rows and genes on columns. Clustering for samples and genes is shown through the dendrogram trees. More similar samples/genes are separated by fewer branch points of the dendrogram tree.
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Samples are now labeled with their Treatment group (Figure 5).
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Samples cluster based on treatment group and the 5μM and 10μM groups are more similar to each other than to the 0μM group.
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- Select
- Choose size and resolution using the Save as SVG dialog (Figure 6)
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- Select Save
The heat map will be saved as a .svg file and downloaded in your web browser.
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