PGS Documentation

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To install or upgrade to the latest version of Partek® Genomics Suite™ software, follow the directions outlined in the Installation Guide.

PGS7.21.1119

Bug fixes:

  • Support MacOS 12
  • Minor bug fixes

PGS7.20.0831

Bug fixes:

  • Minor bug fixes

PGS7.19.1125

Bug fixes:

  • Improved memory efficiency
  • Minor bug fixes

PGS7.18.0723

General Improvement:

  • Microarray methylation workflow to make it more intuitive

Bug fixes:

  • Minor bug fixes

PGS7.18.0518

General Improvement:

  • Implemented DMRCate algorithm for differential methylated regions detection
  • Added false discovery rate report in html format
  • Add options to delete rows contains missing value only during text import

Bug fixes:

  • Minor bug fixes

PGS7.18.0402

General Improvement:

  • Sped up multidimensional scaling function
  • Added chi-square analysis for categorical data
  • Improved Fisher exact test on integer columns with two distinct values
  • Improved handling beta value as 0 or 1 during M value transformation, instead of output "?", we set the value as 1e-6 or 9e-6 by default

Bug fixes:

  • Fixed GEO downloader issue
  • Fixed scatterplot set cutoff line and regression line button issue
  • Fixed a dot plot close issue
  • Bug fixes on OSX

PGS7.18.0130

General Improvement:

  • Improved the methylation workflow – add region methylation analysis workflow
  • Added correlation analysis across two spreadsheets when they have the same set of samples

Bug fixes:

  • Bug fixes on OSX

PGS7.17.1222

General Improvement:

...

  • Most of the computations are multi-threaded, which drastically increases the speed
  • Viewers generated from spreadsheets are new tabs within the same window frame by default; viewer windows can be docked back to the main window frame
  • Workflow panel is visible in any invoked viewers, order of the workflow steps is more intuitive
  • Updated with modern icons and graphics color palette
  • Mixed model ANOVA uses REML by default
  • Sample ID factor is not included in the model of Alt-splicing ANOVA, GO ANOVA, pathway ANOVA
  • Apply button are removed from most of the dialogs
  • Improved interface is cleaner and more user friendly
  • New functional normalization method in the Illumina methylation array importer (450K and 850K)
  • Improved SWAN normalization in the Illumina methylation array importer
  • Allows import of different versions of the Illumina methylation arrays when using the same set of library files
  • Improved text file importer by adding wizard for specifying the properties of the spreadsheet
  • Removed repeated measures menu option, it is recommended to use ANOVA doing repeated measures analysis
  • Simplified menus and dialogs, removed obsolete functions, improved wording
  • Automatically downloads annotation files, even from sites with HTTPS or redirects (e.g. Affymetrix and GEO)
  • Logged data is detected and appropriate defaults are automatically set

 


Older release notes are available on our website at Partek® Genomics Suite™ Software Update Archive.