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Note that the same principles apply to Pathway ANOVA, the only difference being the mapping file; GO ANOVA organizes genes into GO categories, while Pathway ANOVA looks at pathways.

This user guide deals with the following topics:

• Implementation details
• Configuring the GO ANOVA dialog
• Interaction of a term and genes
• Contrasts
• Performing GO ANOVA
• GO ANOVA output
• GO ANOVA visualisations
• Recommended filters