PGS Documentation

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The viewer is almost identical to that seen after importing the aligned reads; the difference is the inclusion of the Isoform Proportions track (highlighted in the Tracks list in Figure 1). Next, you we are going to view a single gene, SLC25A3, to understand how the Partek Genomics Viewer can help you visualize differential expression and alternative splicing results in RNA-seq data

  • Type SLC25A3 in the Plot Position bar at the top of the window and hit Enter. The browser will browse to the gene (Figure 2)

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At this point, you may find it useful to being altering alter track properties. Each track can be individually configured. For example, isoform information will be easier to visualize if we remove a few tracks. 

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