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• Configure the dialog as shown (Figure 3)

Output

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file provides a name for the top-level spreadsheet. Browse can be used to change the output directory. 

• Select Homo sapiens from the Species drop-down menu to allow us to menu 

This will allow us to select a human genome reference assembly alignment.

• Select hg19 for Genome/Transcriptome reference used to align the reads. reads 

This is the reference genome our tutorial data was aligned to using Partek Flow.

• Select OK to open the BAM Sample Manager dialog (Figure 4)
  
  

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