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SubtitleText Example of sample on column, the first row is sample ID, the 2nd and 3rd rows contain sample attribute information, feature count starts from column 4 AnchorName sample on column

Like all other input files, you can upload the file from the Partek Flow server, My Computer or via a URL. Uploading the file brings up a file preview window (Figure 10). The preview of the first few rows and columns of the text file should help you determine on which rows/columns the relevant counts are located (the preview will display up to 100 rows and 100 columns). Inspect the text preview and indicate which row the data header begins.the orientation of the text file under File format>Input format. 

If the read counts are based on a compatible annotation file in Partek Flow, you can specify that annotation file under File formatGene/feature annotation. Select the appropriate genome build and annotation model for your count data. Select the Contain sample attributes checkbox if your data includes additional sample information.

 

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SubtitleText Importing count matrix data preview. This example is showing a count matrix text file has samples on rows with sample attributes colummns AnchorName Importing count matrix data

Figure 9 The example above is showing an example text file contains with samples listed on rows, the first column is sample ID, sample attributes are in column 2 and column 3. Gene count starts from column 4 with gene ID in row one. The gene ID . The gene ID is compatible with the hg19 RefSeq hg19 RefSeq Transcripts - 2016-08-01 annotation model. annotation model. Under the Column information and Row information sections, indicate the location of the Sample ID, which in this case is on Column 1. Indicate the sample attribute location by marking where it starts, which in the example is at Column 2. Mark the Feature ID, which in this case are gene IDs and starts at Column 4 .

If the data has been log transformed, specify the base under Counts format.

 

Project output directory

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