Partek ^® Flow ^® contains a number of quality control tools and reports that can be used to evaluate the current status of your analysis , and to decide on downstream steps. Quality control tools are organised organized under the Quality Assurance / Quality Control (QA/QC) section of the context-sensitive menu and are available for unaligned and aligned reads data nodes.

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In addition to the tools listed above, many other functionalities can also be interpreted in a sense of quality control. For instance, principal components analysis, hierarchical clustering (on sample level), variant detection report, and quantification report. 

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