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Discover de novo motifs
- Select Motif discovery Discovery from the Peak Analysis section of the ChIP-Seq workflow
- Select Discover de novo motifs
- Select OK
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In this case, the motif finder discovered a motif in the NRSF-enriched regions that is 16 base pairs in length. The height of each position is the relative entropy (in bits) and indicates the importance of a base at a particular location in the binding site.
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1. Counts gives the summed counts for each base call across all occurrences of the motif in the region list as {A, C, G, T}
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1-4. chromosome, start, stop, strand give the position
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In the MotifSearch spreadsheet, each motif used in the motif search is shown. The columns detail the results of the search for each motif that was found in the reads.
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Neuwald, A. F., Liu, J.S., & Lawrence, C.E. (1995). Gibbs motif sampling: detection of outer membrane repeats (Vol. 4). Protein Science.
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