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- Create a new project and click the 'Add data' button in the Analyses tab
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- Select Single cell > Spatial > NanoString CosMx and click Next
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- Click Add sample, name it and select the sample folder.
- The importer will automatically select the image folder. If you have uploaded more than one image folder, select the one you want to use for the project.
- Select the appropriate annotation files (in this case we'll use hg38 - Ensembl Transcripts release 109)
- Leave the rest of the settings as default and click default
- Click Finish
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