Chromatin Immunoprecipitation Sequencing (ChIP-Seq) uses high-throughput DNA sequencing to map protein-DNA interactions across the entire genome. Partek ^® Genomics Suite ^® offers convenient visualization and analysis of ChIP-Seq data.

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This tutorial illustrates:

Description of the Data Set

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Data for this tutorial can be downloaded from the Partek website using this link - ChIP-Seq tutorial data. To follow this tutorial, download the 2 .bam files and unzip them on your local computer using 7-zip, WinRAR, or a similar program. Because of the large size of the .bam files, we recommend saving them to a local drive instead of trying to access them on a network drive. The first time a .bam file is read by Partek Genomics Suite, the file will be sorted to allow for faster access. Therefore, you must have write permissions for the .bam files after download and on the file folder where they are stored. 

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Johnson, D. S., Mortazavi, A., Myers, R. M., & Wold, B. (2007). Genome-Wide Mapping of in Vivo Protein-DNA Interactions (Vol. 316). New York, NY: Science. 

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