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Partek® Flow® Partek Flow contains a number of quality control tools and reports that can be used to evaluate the current status of your analysis , and to decide on downstream steps. Quality control tools are organised under organized under the Quality Assurance / Quality Control (QA/QCsection ) section of the toolbox and context-sensitive menu and are available for unaligned and aligned reads data nodes.
This section will illustrate:
- Pre-alignment QA/QC
- ERCC assessment
- Post-alignment QA/QC
- Coverage report
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In addition to the tools listed above, many other functionalities can also be interpreted in a sense of quality control. For instance, principal components analysis, hierarchical clustering (on sample level), variant detection report, and quantification report.
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