Partek Flow Documentation

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SubtitleTextContingency table used to calculate the enrichment p-value. List refers to the list of significant genes, set refers to the gene ontology category
AnchorNameContingency table

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The View extra details () button provides additional information on the GO category (Figure 5). In addition to the details already given in the report, a full list of Genes in list and Genes not in list can be inspected and downloaded (Download data) to the local computer as a text file. Use the arrow to expand these sections. 

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SubtitleTextIf the gene ontology table has more than 100 rows, visualization of results is not possible
AnchorNamego_warning

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If needed, filter down the number results, for instance by using a cut-off based on the enrichment score. Type in the cut-off value in the text box beneath the Enrichment score and hit enter (an example is shown in Figure 11). Once the number or results falls below 100, a link to the Data Viewer will be displayed (Figure 8). Click on the View plots in Data Viewer link to open a new Data Viewer session.

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SubtitleTextUse the View plots in Data Viewer link to visualize the gene ontology enrichment results. The link is not visible if the table contains more than 100 rows
AnchorNameview_plots_data_viewer_link

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Two plots are loaded into Data Viewer (Figure 12). Both plots show enrichment score on the horizontal axis and gene ontology categories (i.e. the ones present in the gene enrichment table) on the vertical axis. The plots show enrichments scores (Enrichment score column of the gene ontology table) and - in addition - the plot on the left uses color range to depict enrichment P-value (green = low, red = high P-value). 

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