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• Plotting Clonotype ID frequency from the Cell counts and VDJ node counts nodes highlights the difference between the two nodes. In this example, the top plot is the number of cells per clonotype and the bottom plot is the number of V(D)J clonotypes present. Note that Cell Ranger does not always call the barcode a cell and this can affect frequencies when making comparisons between cell frequency per clonotype and barcode frequency per clonotype. An example of this would be clonotype1 when comparing the figure above and below. 

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