Flow Documentation

Partek Flow Documentation

Page tree

Versions Compared

Old Version 29

changes.mady.by.user Xiaowen Wang

Saved on

compared with

New Version 30

changes.mady.by.user Xiaowen Wang

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Numbered figure captions
SubtitleTextCells annotated by pseudotime, from start (green) to end (red)
AnchorNamepseuodtime analysis

Image Modified


Following pseudotime calculation, three types of cell nodes will be annotated on the plot.

...

Numbered figure captions
SubtitleTextTrajectory tree colored by pseudotime, following automatic selection of the root node (2D view). White circles - root node (beginning of pseudotime), black circles - branch nodes (splitting of differentiation pathway), and light gray nodes - leaves (outcome of differentiation pathway), black dots - cells not connected to the main trajectory tree.
AnchorNameroot node pseudotime

Image Modified


References

  1. Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L, Steemers FJ, Trapnell C, Shendure J. The single-cell transcriptional landscape of mammalian organogenesis. Nature. 2019 Feb;566(7745):496-502. doi: 10.1038/s41586-019-0969-x. Epub 2019 Feb 20. PMID: 30787437; PMCID: PMC6434952.

...