Partek Flow Documentation

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Set the percent of reads in cells per sample to include. The number of barcodes included will be set to match the specified percent of reads in cells for each sample. Barcodes are selected included starting with the barcode with the highest number of total UMIs and proceeding in descending order of total UMIs per barcode until the specified percent of reads has been met or exceeded

Previous filter

If you have already run a Filter barcodes task for your samples in the project, the Previous filter option will be available. This options lets you filter to the same cell barcodes that were included by the previous filter. This option is particularly useful for CITE-Seq data, where antibody barcodes and gene expression data must be processed separately, but you will want to analyze the same cell barcodes in downstream steps. 

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