PGS Documentation

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While many types of data sets are automatically linked with appropriate annotation files upon import, we will illustrate how to manually link an annotation file with a spreadsheet. 

  • Right-click Breast_Cancer.txt in the spreadsheet tree
  • Select Properties (Figure 1)

Numbered figure captions
SubtitleTextSelecting file properties for a spreadsheet
AnchorNameAdding Annotation

Configure the Configure Genomic Properties as shown (Figure 2) with the following steps:

  • Select Gene Expression from the Choose the type of genomic data drop-down menu
  • Select Feature in column label 
  • Select Browse... 
  • Select HG_U95Av2.na36.annot.csv from the microarray libraries folder
  • Select Set Column
  • Select Gene Symbol from the Choose column containing gene symbol/microRNA name dialog
  • Select Homo sapiens and hg19 from the Species and Genome Build drop-down menus

Numbered figure captions
SubtitleTextConfigure the genomic properties dialog as shown
AnchorNameConfiguring Genomic Properties

 

There is now an * after the spreadsheet name in the spreadsheet tree. This indicates an unsaved change has been made to the spreadsheet. 

  • Select () to save the changes

 

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