GO ANOVA, GSEA/GeneSet ANOVA, and Pathway ANOVA

As these features require intensity (or count) data as well as experimental groups, these features cannot be performed on an imported lists.

Integrating imported data

If the data from imported spreadsheets has been associated with annotations, several integration approaches may be used to integrate multiple kinds of imported data. For instance, the

The Genome Browser may be used to display data from multiple spreadsheets/experiments regardless of the type of spreadsheets (imported data or microarray or NGS experiments).

The Venn Diagram tool may be used to find overlaps based on a feature name.

The Find Overlapping Regions tool can use an imported gene list and a list of regions from a copy number or ChIP-Seq experiment to identify genomic regions in common.

Additional use cases

This User Guide did not discuss every operation that can be performed on an imported list of regions, SNPs, or genes. If there is some other feature in PGS that you would like to apply to an imported list, please contact the technical support team for additional guidance. If you have found a novel use of PGS feature on an imported list that you think should be included in this User Guide, please let us know.

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