Partek Flow Documentation

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  • Create a new project and click the 'Add data' button in the Analyses tab

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  • Select Single cell > Spatial > NanoString CosMx and click Next  


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  • Click Add sample, name it and select the sample folder.
  • The importer will automatically select the image folder. If you have uploaded more than one image folder, select the one you want to use for the project.
  • Select the appropriate annotation files (in this case we'll use hg38 - Ensembl Transcripts release 109)
  • Leave the rest of the settings as default and click Finish

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