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STARsolo is a versatile tool developed for single-cell RNA sequencing analysis. It inputs the raw FASTQ reads files, and performs mapping, demultiplexing and quantification for single cell RNA-seq data. It follows CellRanger logic for cell barcode whitelisting and UMI deduplication, and produces nearly identical gene counts in the same format. STARsolo is also running much faster than the CellRanger[1].
Run STARsolo in Partek Flow
Partek® Flow® wraps STARsolo v2.7.11a and focuses on assays from 10X Genomics.
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