Space Ranger output files are pre-processed 10x Genomics Visium data. The steps covered here will show you how to import and continue analyses with this pre-processed data , referred to from the Space Ranger pipeline. Partek Flow refers to this this high cellular resolution data as Single cell counts; each point (spot) can be 1-10 cell resolution depending on the tissue type. 

Add files to the project

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The sample table is pre-populated with sample attributes, # Cells. Sample attributes can be added and edited manually by clicking Manage in the Sample attributes menu on the left. If a new attribute is added, click Assign values to assign samples to different groups. Alternatively, you can use the Assign values from a file option to assign sample attributes using a tab-delimited text file. For more information about sample attributes, see here.

For this tutorial, we do not need to edit or change any sample attributes.

More about 10x Genomics Visium Spatial Gene Expression

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