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• Duplicate the plot by clicking the Duplicate plot button in the upper right controls (arrow 1)
• Open the Axes configuration option (arrow 2)
• Change the Sample on the duplicated image under Misc (arrow 3)

Each data point is a tissue spot. 

Visualize the annotated image from the Annotate Visium image task

If starting with fastq files, the Annotate Visium image task will create a new result node, Annotated counts. 

• Double click on the Annotated counts node to invoke the Data Viewer showing data points overlaid on top of the microscopy image 
• Follow the steps outlined above by duplicating the image to visualize the multiple samples

Image Added

Data Viewer session as a result of opening an Annotated counts data node. 

Modify Style

To modify the points on the image to show more of the histology use the Style configuration option. 

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