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To modify the points on the image to show more of the histology use the Style configuration option. 

• Click Style in the left panel
• Move the Opacity slider to the left
• Change the Point size to 3 

• Click on the Single cell counts node 

A context-sensitive menu will appear on the right-hand side of the pipeline (Figure 9). This menu includes tasks that can be performed on the selected counts data node. 

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A task node, Single cell QA/QC, is produced. Initially, the node will be semi-transparent to indicate that it has been queued, but not completed. A progress bar will appear on the Single cell QA/QC task node to indicate that the task is running. 

• Click the Single cell QA/QC node once it finishes running
• Click Task report on the task menu (Figure 7)

The Single cell QA/QC report opens in a new data viewer session. There are interactive violin plots showing the most commonly used quality metrics for each cell from all samples combined (Figure 8). Each point on the plots is a cell and the violins illustrate the distribution of values for the y-axis metric. 

The plots are highly customizable and can be used to explore the quality of cells in different samples. For more information on navigating Single cell QA/QC 

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