Flow Documentation

Partek Flow Documentation

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Obtain and add files to the project

The project includes Human Breast Colon Cancer (Block A Section Replicate 1) and Human Breast Colon Cancer (Block A Section Replicate 2) output files in one project. 

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SubtitleTextObtain the filtered H5 and Spatial imaging data outputs from the Space Ranger output on your machine
AnchorNameObtain the filtered H5 and Spatial imaging data outputs from the Space Ranger output

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  • Navigate the options to select 10x Genomics Visium Space Ranger output as the file format for input. 

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SubtitleTextAdd Visium Space Ranger outputs
AnchorNameNavigate visium ouputs

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Once the download completes, the sample table will appear in the Metadata tab, with one row per sample (Figure 5).

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