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If you would like specific groups (e.g. cell types) in a certain order, do not perform hierarchical clustering on these cells and instead choose to assign order, then use click and drag to reorder the groups. If you want to remove a group, you can choose to exclude this group in the filtering section. You can still perform hierarchical clustering on the features if you would like to. Hierarchical clustering will force the heatmap to cluster and you would need to click the dendrogram nodes to switch the order. Click here for more information. 

How do I display UMAP for each sample in the Data Viewer?

For a multi-sample project, all of the downstream tasks will be run separately if the PCA ran with 'Split by sample' was checked when performing the PCA task. Visualization of different samples could can be displayed by 'Sample' option under using the 'Misc' section in the 'axis' card. If one would like to To show different samples side by side, one can click 'Duplicate plot' first, then use the 'Sample' option to switch one of the samples.

Statistics FAQs

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