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- Click Projects at the top of the page
- Click Import project
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SubtitleText | Importing project invoke |
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AnchorName | Invoking import |
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- Choose GEO / ENA project for Select files from
- Type the BioProject ID or the GEO Accession number
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SubtitleText | Enter the Bioproject ID in the Import project dialog |
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AnchorName | GEO/ENA import |
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The format of a BioProject ID is PRJNA followed by one to six numbers (e.g., PRJNA291540). The format of a GEO Accession number is GSE followed by one to five numbers (e.g., GSE71578).
- Click Import project at the bottom
Imported projects from GEO / ENA
The data tab will be populated with sample information. Sample names will be GSM IDs for each sample. Attributes and attribute levels are drawn from the GEO sample characteristics information (Figure 3).
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SubtitleText | GEO import populates the data tab |
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AnchorName | Data tab after GEO ENA import |
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Project details are added to the Project settings tab (Figure 4). The project name is the first 54 characters taken from the BioProject ID title. The project description is the BioProject description with the GEO ID and BioProject IDs appended.
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SubtitleText | Project details from ENA |
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AnchorName | Project settings page GEO ENA import |
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The Analyses tab will include an Unaligned reads data node once the data download has started (Figure 5). It may take a while for the download to complete depending on the size of the data. FASTQ files are downloaded from the ENA BioProject page.
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SubtitleText | FASTQ files will be added as an Unaligned reads data node in the Analyses tab |
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AnchorName | Analyses tab after GEO ENA import |
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You can search ENA using the GEO ID (e.g., GSE71578) to check if there is a matching ENA project (Figure 6).
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SubtitleText | Searching ENA using a GEO ID |
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AnchorName | Searching ENA for GEO project |
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Open the Study result to view the BioProject ID (e.g., PRJNA381606) and a table with information about the samples and files included in the project (Figure 7).
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SubtitleText | ENA Study page |
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AnchorName | ENA Study page |
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