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The Xenium output bundle should be included for each sample (Figure 4). Each sample requires the whole sample folder or a folder containing these 5 files: cell_feature_matrix.h5, cells.csv.gz, cell_boundaries.csv.gz, transcripts.csv.gz, morphology.ome.tif. Once added, the Cells and Features values will update. You can choose an annotation file during import that matches what was used to generate the feature count.

Do not limit cells with a total read count since Xenium data is targeted to less features. 

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