Partek Flow Documentation

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RPM (reads per million) is the same as Total Count. Please use Total Count.

 

What is a canonical transcript?

 

For genes with multiple transcripts, one of the transcripts is picked as the canonical transcript.  Based on the UCSC definition from the table browser,
knownCanonical - identifies the canonical isoform of each cluster ID, or gene. Generally, this is the longest isoform.
we define the canonical transcript as either the longest CDS (coding DNA sequence) if the gene has translated transcripts, or the longest cDNA.

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