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Rest API
We now provide programmatic access to your Partek Flow using the command line
- Several tasks are available, including project creation, sample import and running a pipeline
User Added Tasks
- Administrators can add executables and scripts to the set of analysis tools available on a given installation
- Once added, these User added tasks can be made visible to regular users using the Task Management Page
Toolkits
RNA-seq Toolkit
- This license feature allows users to run the RNA-seq workflow.
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- Users can convert microarray data to unaligned reads. The conversion tasks for the aligners appear in the context-sensitive menu, under the section “Convert to Aligned Reads”. Refer to Microarray Toolkit for additional details.
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ChIP-Seq Toolkit
- Implementation of the MACS2 peak caller as a task (Zhang et al. Model-based Analysis of ChIP-Seq (MACS). Genome Biol (2008) vol. 9 (9) pp. R137)
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Overview
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