Partek Flow Documentation

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  • Click Transfer files on the homepage, under settings, or during import (Figure 3). 

UPDATE SECTION WHEN CARD FIXED Proceed to transfer files as shown below using the 10x Genomics Xenium importer (Figure 3).

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  • Navigate to the appropriate files for each sample using Browse (Figure 4). 

The Xenium output bundle should be included for each sample using Browse (Figure 4). The Each sample requires the whole sample folder can be used, or a folder containing these 5 files (: cell_feature_matrix.h5, cells.csv.gz, cell_boundaries.csv.gz, transcripts.csv.gz, morphology.ome.tif) can be added per sample. Once added, the Cells and Features values will update. You can choose an annotation file during import that matches what was used to generate the feature count. Do not limit cells with a total read count since Xenium data is targeted to less features. 

Numbered figure captions
SubtitleTextAdd Xenium output bundle
AnchorNameNavigate Xenium import

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