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- Obtain the filtered Count matrix files (h5 or HDF5) files and Spatial outputs (Figure 1) for each sample. Please note that the 10x Genomics Space Ranger output can be count matrix data as 1 filtered .h5 file per sample or sparse matrix files for each sample as 3 files (two .csv with one .mtx or two .tsv with one .mtx for each sample). The spatial output files should be in compressed format (.zip). The high resolution image can be uploaded and is optional.
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- Click Transfer files on the homepage, under settings, or during import (Figure 2)Select 10x Genomics Visium Space Ranger output as the file format for input.
Proceed to transfer files as shown below using the Choose to import 10x Genomics Visium Space Ranger outputs importer output for your project (Figure 2).
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