Partek Flow Documentation

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The project includes Human Breast Cancer (Block A Section 1) and Human Breast Cancer (Block A Section 2) output files in one project. 

  • Click your avatar (Figure 1)Obtain the filtered Count matrix h5 (HDF5) files and Spatial outputs (Figure 1). 10x Genomics Space Ranger output can be count matrix data as 1 filtered .h5 file per sample or sparse matrix files for each sample as 3 files (two .csv with one .mtx or two .tsv with one .mtx for each sample). The spatial output files should be in compressed format (.zip). The high resolution image can be uploaded and is optional. 

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SubtitleTextLocation of the Settings link on the main page of Partek Flow
AnchorNameGetting to the settings
Obtain the filtered H5 and Spatial imaging data outputs from the Space Ranger output

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  • Click Settings 

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