Page History
...
Text file and data are both in server and in same directory
If the text file containing the sample information and the data files to be imported are both in the same directory of the Partek Flow server and are located in the same directoryserver, simply include the filenames in the text file as shown in Figure 6. You do not have to specify the file path.
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
Text file and data are in different directories
If the text file and the data files are different directories, you must modify Figure 3 6 to include the file paths. For text files located in the Partek Flow server, you can use relative or absolute file paths. For text files located in My Computer or URL you must use an absolute file path.
Relative path
You can use a path relative to the location of the text file you are using to create the sample table. For example in Figure 7, the text file is located in a directory called "download" while the files are in a subdirectory called MyData, then the filenames must include the path /MyData/. An example would be: /MyData/NA1031_S25_L007_R1_001.fastq.gz
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
Absolute path
You can use the full path to the file based on your Partek Flow server. You must include the paths starting from the Partek Flow home directory (Figure 8, red box). For typical installations, the path begins with /home/flow/FlowData/ and so the filenames to include in the text file may look like this: /home/flow/FlowData/download/MyData/NA1031_S25_L007_R1_001.fastq.gz
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
Once you have selected the text file with filenames and/or file paths, click Next. The text file will be summarized as in Figure 9. If the file types are valid, Partek Flow will recognize the filenames and locate the files within the directory. The Files column represent files to be imported.
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
|
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
At this stage, you can also go to the Analyses Tab of the project and see that the data node has been created but the color is light blue, which indicates the import is not complete (Figure 12, left). Once all the files have been imported from the queue, the data node will appear darker (Figure 12, right).
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
To view the files associated with the data, go to the Data Tab and click Show data files to expand the table. Figure 13 shows that four files were successfully imported for each sample. You can add more or delete samples as described in the Adding samples section.
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
...