If your samples are in different subdirectories, you must include the path in for your file name. You can use either a relative path or an absolute path.

Relative paths

This means the the path you will include is relative to the location of the text file. For example in Figure 12, the text file is located in a directory called "download" while the files are in a subdirectory called MyData, then the filenames must include the path /MyData/. An example is shown below:

/MyData/NA1031_S25_L007_R1_001.fastq.gz

Absolute path

This means the the path you will include is the full file path to the file based on the file structure of Partek Flow. Where the text file is located you can simply add the directories based on You must include the directories starting from the Partek Flow home directory (see region in red box in Figure 13). For typical installations, the path begins with /home/flow/FlowData/ and so the filenames to include in the text file may look like this:

/home/flow/FlowData/download/MyData/NA1031_S25_L007_R1_001.fastq.gz