Partek Flow Documentation

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The following file types are valid and will be recognized by the Partek Flow file browser. Seurat Rds files should be unzipped before transfer to the server, otherwise there is no need to unzip compressed files.:   

  • BAMbam
  • bcf
  • bcl
  • bgx
  • bpm
  • cbcl
  • CEL
  • csv
  • fa
  • fasta
  • fastq
  • fcs
  • fna
  • fq
  • gz
  • h5ad
  • h5 matrix
  • idat
  • loom
  • mtx
  • probe_tab
  • qual
  • raw
  • Rdsrds
  • SAMsam
  • sff
  • sra
  • tar
  • tsv
  • txt
  • vcf
  • zip


In cases where paired end fastq data is present, files will also be automatically recognized and their paired relationship will be maintained throughout the analysis.

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