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Classification in Partek Flow can performed manually or with automatic cell classification. 

Manual classification in Partek Flow

For more help related to manual classification please see Classifying cells or watch this related help video: Manual classification. Partek flow provides hosted lists from the literature for many cell types which can be added using List management. 

Automatic classification in Partek Flow

The Garnett¹ automated cell type classification algorithm has been wrapped into Partek Flow as the Classification task. As with the original Garnett tool, Classification in Partek Flow works on single-cell data, along with a cell type definition (marker) file, and trains a regression-based classifier. Once a classifier is obtained and published, it can be applied to classify future datasets from similar tissues. To improve the user experience, both the marker file (.txt) and the classifier file (.rds) have been implemented as library files in Partek Flow. 

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