Partek Flow Documentation

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  • Create a new project to upload your data. Ensure that you have transferred the filtered contig_annotations.csv file(s)2 for each sample from either the cellranger vdj7 or cellranger multi8 pipeline to the server, as well as . If you have matching gene expression data, import the filtered feature barcode matrices matrices as well as in H54 or MEX5 format from the cellranger multi pipeline for each sample if you have matching gene expression data.   
  • Click Import, then select Import single cell V(D)J data 

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  • Upload either the filtered contig_annotations.csv file alone or, if you have matching gene expression, with the filtered count matrix per sample and give each sample a name. To add a sample use the Action. In the example below which is using the default settings, there is one sample with two files, one for V(D)J and one for gene expression. Click Finish

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