Partek Flow Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Numbered figure captions
SubtitleTextIf the gene ontology table has more than 100 rows, visualization of results is not possible
AnchorNamego_warning

Image Modified


If needed, filter down the number results, for instance by using a cut-off based on the enrichment score. Type in the cut-off value in the text box beneath the Enrichment score and hit enter (an example is shown in Figure 12). Once the number or results falls below 100, a link to the Data Viewer will be displayed (Figure 8). Click on the View plots in Data Viewer link to open a new Data Viewer session. 

...

Numbered figure captions
SubtitleTextUse the View plots in Data Viewer link to visualize the gene ontology enrichment results. The link is not visible if the table contains more than 100 rows
AnchorNameview_plots_data_viewer_link

Image Modified


Two plots are loaded into Data Viewer (Figure 13). Both plots show enrichment score on the horizontal axis and gene ontology categories (i.e. the ones present in the gene enrichment table) on the vertical axis. The plots show enrichments scores (Enrichment score column of the gene ontology table) and - in addition - the plot on the left uses color range to depict enrichment P-value (green = low, red = high P-value). 

...

Numbered figure captions
SubtitleTextVisualizing gene ontology results. Vertical axis shows the gene ontology categories present in the underlying gene ontology table
AnchorNameenrichment_plot

Image Modified


References

  1. Ashburner M, Ball CA, Blake JA et al. Gene Ontology: tool for the unification of biology. Nat Genetics. 2000; 25:25-29.
  2. The Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 2015; 43:D1049-1056.Recommended citations from the Geneontology.org website

...