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Partek Flow Documentation

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  • When overlaying the Clonotype ID on plots from the Single cell counts analysis pipeline (such as the UMAP example below), make sure that you use the Clonotype ID from the Single cell counts node and not the VDJ node. 

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References

  1. Tonegawa, S. Somatic generation of antibody diversity. Nature 302,575–581 (1983). https://doi.org/10.1038/302575a0
  2. https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig-annotation 
  3. https://support.10xgenomics.com/single-cell-vdj/software/overview/welcome 
  4. https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/advanced/h5_matrices
  5. https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/output/matrices
  6. https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/algorithms/annotation#productive
  7. https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/vdj 
  8. https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multi