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- Create a new project to upload your data. Ensure that you have transferred the filtered contig_annotations.csv file(s)2 for each sample from either the cellranger vdj5 6 or cellranger multi6 7 pipeline to the server, as well as the filtered feature barcode matrices in H5 or MEX format from the cellranger multi pipeline for each sample if you have matching gene expression data.
- Click Import, then select Import single cell V(D)J data
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- Tonegawa, S. Somatic generation of antibody diversity. Nature 302,575–581 (1983). https://doi.org/10.1038/302575a0
- https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig-annotation
- https://support.10xgenomics.com/single-cell-vdj/software/overview/welcome
- https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/7.0/advanced/h5_matrices
- https://support.10xgenomics.com/single-cell-vdjgene-expression/software/pipelines/latest7.0/usingoutput/vdj matrices
- https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multivdj
- https://support.10xgenomics.com/single-cell-gene-expressionvdj/software/pipelines/7.0latest/outputusing/matricesmulti
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