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Memory limit (GB): Restricts Cell Ranger - ATAC to use specified amount of memory (in GB) to execute pipeline stages. 

If users have converted FASTQ outside of Partek, Flow has the importer available for count matrix (Figure 8A). Files that Flow will need to complete the import includes: filtered_feature_bc_matrix.h5, per_barcode_metrics.csv, peaks.bed, fragments.tsv.gz.tbi, fragments.tsv.gz. Those files usually could be found in the outs/ subdirectory within the pipeline output directory (Figure 8B).

References

1. https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome

2. https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/release-notes

3. https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc
4. https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/output/summary

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