Partek® Flow® can import a wide variety of data types including raw counts, matrices, microarray, variant call files files as well as unaligned and aligned NGS data.
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The following file types are valid and will be recognized by the Partek Flow file browser. There is no need to unzip compressed files.:
idatvcfgztar- bgx
- bpm
- cbcl
- CEL
- csv
- fasta
- fastq
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txtSAMbgx- h5 matrix
- idat
- loom
- mtx
- probe_tab
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CELzipbcfsrafastaBAMh5 matrix ...
In cases where paired end fastq data is present, files will also be automatically recognized and their paired relationship will be maintained throughout the analysis.
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- Adapter sequences
- "_bbbbbb" followed by "_" or at the end of the file name, where each "b" is "A", "C", "G", or "T"
- Lane numbers
- "_L###" followed by "_" or at the end of the file name, where each "#" is a digit 0 to 9
Dates
Set number
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